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ATU_RS23900 type IV secretion system single-stranded DNA binding effector VirE2 [ Agrobacterium fabrum str. C58 ]

Gene ID: 1137513, updated on 27-Aug-2024

Summary

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Gene symbol
ATU_RS23900
Gene description
type IV secretion system single-stranded DNA binding effector VirE2
Locus tag
ATU_RS23900
Gene type
protein coding
Organism
Agrobacterium fabrum str. C58 (strain: C58, culture-collection: ATCC:33970, type-material: type strain of Agrobacterium fabrum)
Lineage
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex
Old locus tag
AGR_pTi_28; Atu6190
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Genomic context

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Location:
plasmid: Ti
Sequence:
NC_003065.3 (206256..207926)

NC_003065.3Genomic Context describing neighboring genes Neighboring gene type IV secretion system virulence effector VirE3 Neighboring gene type IV secretion system effector chaperone VirE1 Neighboring gene virA/G regulated protein Neighboring gene IS66 family insertion sequence element accessory protein TnpB Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003065.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Variable internal flexibility characterizes the helical capsid formed by agrobacterium VirE2 protein on single-stranded DNA. Bharat TA, et al. Structure, 2013 Jul 2. PMID 23769668
  2. VirE2-dependent pores for ssDNA transfer across artificial and cell membranes. Volokhina I, et al. J Bioinform Comput Biol, 2012 Apr. PMID 22809344
  3. VirE2, a type IV secretion substrate, interacts with the VirD4 transfer protein at cell poles of Agrobacterium tumefaciens. Atmakuri K, et al. Mol Microbiol, 2003 Sep. PMID 12950931, Free PMC Article
  4. The VirE1VirE2 complex of Agrobacterium tumefaciens interacts with single-stranded DNA and forms channels. Duckely M, et al. Mol Microbiol, 2005 Nov. PMID 16262795
  5. The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Wood DW, et al. Science, 2001 Dec 14. PMID 11743193

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A three-dimensional reconstruction of the VirE2-ssDNA complex using cryo-electron microscopy and iterative helical real-space reconstruction.
    Title: Variable internal flexibility characterizes the helical capsid formed by agrobacterium VirE2 protein on single-stranded DNA.
  2. long-lived jumps in voltage-dependent membrane conductance during coincubation of planar black membranes with the VirE2 protein
    Title: VirE2-dependent pores for ssDNA transfer across artificial and cell membranes.
  3. Here, we describe the ability of the VirE1VirE2 complex to both bind ssDNA and form channels.
    Title: The VirE1VirE2 complex of Agrobacterium tumefaciens interacts with single-stranded DNA and forms channels.
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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General protein information

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Preferred Names
type IV secretion system single-stranded DNA binding effector VirE2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003065.3 Reference assembly

    Range
    206256..207926
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010974922.1 MULTISPECIES: type IV secretion system single-stranded DNA binding effector VirE2 [Rhizobium/Agrobacterium group]

    See identical proteins and their annotated locations for WP_010974922.1

    UniProtKB/Swiss-Prot
    P08062
    UniProtKB/TrEMBL
    A0A2Z2PLK0, A0A2Z2PP35, A0A2Z2PPD5, A0A2Z2PUK3, A0AAF0HG66
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P08062.2

Gene LinkOut

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Research Materials