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LOC113686282 transmembrane and TPR repeat-containing protein 4-like [ Pocillopora damicornis ]

Gene ID: 113686282, updated on 21-Dec-2023

Summary

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Gene symbol
LOC113686282
Gene description
transmembrane and TPR repeat-containing protein 4-like
Locus tag
pdam_00003450
See related
EnsemblRapid:LOC113686282
Gene type
protein coding
RefSeq status
MODEL
Organism
Pocillopora damicornis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Pocilloporidae; Pocillopora
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC113686282 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM370409v1 (GCF_003704095.1) Unplaced Scaffold NW_020847747.1 (217843..224104)

NW_020847747.1Genomic Context describing neighboring genes Neighboring gene beta carbonic anhydrase 1-like Neighboring gene CST complex subunit TEN1-like Neighboring gene glycine receptor subunit alpha-4-like Neighboring gene tyramine receptor 1-like Neighboring gene para-nitrobenzyl esterase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020847747 Unplaced Scaffold Reference ASM370409v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pocillopora damicornis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM370409v1 Primary Assembly

Genomic

  1. NW_020847747.1 Reference ASM370409v1 Primary Assembly

    Range
    217843..224104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027203886.1 → XP_027059687.1  transmembrane and TPR repeat-containing protein 4-like

    UniProtKB/TrEMBL
    A0A3M6V4Z8
    Related
    XP_027059687.1, XM_027203886.1
Nucleotide Protein
Heading Accession and Version

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