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LOC113664982 alpha-sarcoglycan-like [ Pocillopora damicornis ]

Gene ID: 113664982, updated on 21-Dec-2023

Summary

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Gene symbol
LOC113664982
Gene description
alpha-sarcoglycan-like
Locus tag
pdam_00007956
See related
EnsemblRapid:LOC113664982
Gene type
protein coding
RefSeq status
MODEL
Organism
Pocillopora damicornis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Pocilloporidae; Pocillopora
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Genomic context

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See LOC113664982 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM370409v1 (GCF_003704095.1) Unplaced Scaffold NW_020844115.1 (290435..299863, complement)

NW_020844115.1Genomic Context describing neighboring genes Neighboring gene poly(ADP-ribose) glycohydrolase-like Neighboring gene uncharacterized LOC113664985 Neighboring gene N6-adenosine-methyltransferase non-catalytic subunit-like Neighboring gene 60S ribosomal protein L12-like Neighboring gene U1 small nuclear ribonucleoprotein A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020844115 Unplaced Scaffold Reference ASM370409v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pocillopora damicornis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM370409v1 Primary Assembly

Genomic

  1. NW_020844115.1 Reference ASM370409v1 Primary Assembly

    Range
    290435..299863 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027180631.1 → XP_027036432.1  alpha-sarcoglycan-like isoform X1

    UniProtKB/TrEMBL
    A0A3M6UF04
    Related
    XP_027036432.1, XM_027180631.1
    Conserved Domains (1) summary
    pfam05510
    Location:26 → 361
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_027180632.1 → XP_027036433.1  alpha-sarcoglycan-like isoform X2

    Related
    XP_027036433.1, XM_027180632.1
Nucleotide Protein
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