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hs2st1b heparan sulfate 2-O-sulfotransferase 1b [ Tachysurus fulvidraco (yellow catfish) ]

Gene ID: 113642921, updated on 10-Apr-2024

Summary

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Gene symbol
hs2st1b
Gene description
heparan sulfate 2-O-sulfotransferase 1b
See related
EnsemblRapid:ENSTFUG00005032107
Gene type
protein coding
RefSeq status
MODEL
Organism
Tachysurus fulvidraco
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus
Orthologs
zebrafish all
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Genomic context

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See hs2st1b in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
101 current HZAU_PFXX_2.0 (GCF_022655615.1) 5 NC_062522.1 (13384825..13468151)
100 previous assembly ASM372403v1 (GCF_003724035.1) Unplaced Scaffold NW_020848416.1 (13002350..13085867, complement)

Chromosome 5 - NC_062522.1Genomic Context describing neighboring genes Neighboring gene cilium assembly protein DZIP1L-like Neighboring gene cilium assembly protein DZIP1L-like Neighboring gene LIM domain only 4b Neighboring gene uncharacterized LOC113642838

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tachysurus fulvidraco Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZAU_PFXX_2.0

Genomic

  1. NC_062522.1 Reference HZAU_PFXX_2.0

    Range
    13384825..13468151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027146734.2 → XP_027002535.1  heparan sulfate 2-O-sulfotransferase 1

    Related
    ENSTFUP00005055927.1, ENSTFUT00005077897.1

  2. XM_047814188.1 → XP_047670144.1  heparan sulfate 2-O-sulfotransferase 1

Nucleotide Protein
Heading Accession and Version

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