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tlr2 toll-like receptor 2 [ Tachysurus fulvidraco (yellow catfish) ]

Gene ID: 113640381, updated on 10-Apr-2024

Summary

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Gene symbol
tlr2
Gene description
toll-like receptor 2
See related
EnsemblRapid:ENSTFUG00005026728
Gene type
protein coding
RefSeq status
MODEL
Organism
Tachysurus fulvidraco
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus
Orthologs
human zebrafish all
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Genomic context

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See tlr2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
2
Annotation release Status Assembly Chr Location
101 current HZAU_PFXX_2.0 (GCF_022655615.1) 18 NC_062535.1 (872501..877500, complement)
100 previous assembly ASM372403v1 (GCF_003724035.1) Unplaced Scaffold NW_020847782.1 (405456..410515)

Chromosome 18 - NC_062535.1Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage-dependent, gamma subunit 3a Neighboring gene protein kinase C, beta a Neighboring gene suppressor of cytokine signaling 1b Neighboring gene glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tachysurus fulvidraco Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZAU_PFXX_2.0

Genomic

  1. NC_062535.1 Reference HZAU_PFXX_2.0

    Range
    872501..877500 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027142860.2 → XP_026998661.1  toll-like receptor 2 isoform X2

    UniProtKB/TrEMBL
    A0A1B0VTL0

  2. XM_027142853.2 → XP_026998654.1  toll-like receptor 2 isoform X1

    UniProtKB/TrEMBL
    A0A1B0VTL0
    Related
    ENSTFUP00005049060.1, ENSTFUT00005064954.1
    Conserved Domains (7) summary
    PRK15370
    Location:362 → 549
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    smart00255
    Location:643 → 783
    TIR; Toll - interleukin 1 - resistance
    sd00031
    Location:54 → 75
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:175 → 194
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:74 → 133
    LRR_8; Leucine rich repeat
    cd21340
    Location:60 → 182
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    NF033190
    Location:222 → 472
    inl_like_NEAT_1; NEAT domain-containing leucine-rich repeat protein
Nucleotide Protein
Heading Accession and Version

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