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ERCC4 ERCC excision repair 4, endonuclease catalytic subunit [ Lagenorhynchus obliquidens (Pacific white-sided dolphin) ]

Gene ID: 113626184, updated on 15-Mar-2024

Summary

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Gene symbol
ERCC4
Gene description
ERCC excision repair 4, endonuclease catalytic subunit
See related
EnsemblRapid:ENSLOBG00000006013
Gene type
protein coding
RefSeq status
MODEL
Organism
Lagenorhynchus obliquidens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Lagenorhynchus
Orthologs
human mouse all
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Genomic context

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See ERCC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM367639v1 (GCF_003676395.1) Unplaced Scaffold NW_020837962.1 (1973479..2008212, complement)

NW_020837962.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113626185 Neighboring gene myocardin related transcription factor B Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene 60S ribosomal protein L27a-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020837962 Unplaced Scaffold Reference ASM367639v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA endodeoxyribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair involved in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in resolution of meiotic recombination intermediates IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleotide-excision repair factor 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair endonuclease XPF

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lagenorhynchus obliquidens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM367639v1 Primary Assembly

Genomic

  1. NW_020837962.1 Reference ASM367639v1 Primary Assembly

    Range
    1973479..2008212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027117349.1 → XP_026973150.1  DNA repair endonuclease XPF isoform X1

    Related
    ENSLOBP00000007998.1, ENSLOBT00000008842.1
    Conserved Domains (1) summary
    cl27383
    Location:97 → 907
    ERCC4; ERCC4 domain

  2. XM_027117350.1 → XP_026973151.1  DNA repair endonuclease XPF isoform X2

    Conserved Domains (1) summary
    cl27383
    Location:97 → 638
    ERCC4; ERCC4 domain
Nucleotide Protein
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