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galntl6 polypeptide N-acetylgalactosaminyltransferase like 6 [ Electrophorus electricus (electric eel) ]

Gene ID: 113586345, updated on 15-Mar-2024

Summary

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Gene symbol
galntl6
Gene description
polypeptide N-acetylgalactosaminyltransferase like 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Orthologs
human zebrafish all
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Genomic context

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See galntl6 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 11 NC_049545.1 (24480789..24635392, complement)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020826435.1 (25410..73740, complement)

Chromosome 11 - NC_049545.1Genomic Context describing neighboring genes Neighboring gene topoisomerase I binding, arginine/serine-rich a Neighboring gene NADH:ubiquinone oxidoreductase subunit B Neighboring gene basic salivary proline-rich protein 2-like Neighboring gene SPARC-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase-like 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049545.1 Reference fEleEle1.pri

    Range
    24480789..24635392 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035531306.1 → XP_035387199.1  polypeptide N-acetylgalactosaminyltransferase-like 6

    Conserved Domains (2) summary
    cd02510
    Location:145 → 440
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:456 → 584
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_035531305.1 → XP_035387198.1  polypeptide N-acetylgalactosaminyltransferase-like 6

    Conserved Domains (2) summary
    cd02510
    Location:145 → 440
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:456 → 584
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_035531307.1 → XP_035387200.1  polypeptide N-acetylgalactosaminyltransferase-like 6

    Conserved Domains (2) summary
    cd02510
    Location:145 → 440
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:456 → 584
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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