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ccn2b cellular communication network factor 2b [ Electrophorus electricus (electric eel) ]

Gene ID: 113584020, updated on 15-Mar-2024

Summary

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Gene symbol
ccn2b
Gene description
cellular communication network factor 2b
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Orthologs
zebrafish all
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Genomic context

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See ccn2b in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 4 NC_049538.1 (9204476..9208677)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020826311.1 (285782..289964)

Chromosome 4 - NC_049538.1Genomic Context describing neighboring genes Neighboring gene tRNA selenocysteine 1 associated protein 1a Neighboring gene syntaxin 12 Neighboring gene erythrocyte membrane protein band 4.1a Neighboring gene transmembrane protein 200B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCN family member 2b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049538.1 Reference fEleEle1.pri

    Range
    9204476..9208677
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027020699.2 → XP_026876500.2  CCN family member 2b isoform X1

    UniProtKB/TrEMBL
    A0A4W4F0F7
    Conserved Domains (4) summary
    smart00214
    Location:97 → 156
    VWC; von Willebrand factor (vWF) type C domain
    pfam00219
    Location:24 → 76
    IGFBP; Insulin-like growth factor binding protein
    pfam19035
    Location:191 → 234
    TSP1_CCN; CCN3 Nov like TSP1 domain
    cl21545
    Location:245 → 329
    GHB_like; Glycoprotein hormone beta chain homologues

  2. XM_027020700.2 → XP_026876501.2  CCN family member 2b isoform X2

    UniProtKB/TrEMBL
    A0A4W4F0F7
    Conserved Domains (4) summary
    smart00214
    Location:97 → 156
    VWC; von Willebrand factor (vWF) type C domain
    pfam00219
    Location:24 → 76
    IGFBP; Insulin-like growth factor binding protein
    pfam19035
    Location:191 → 234
    TSP1_CCN; CCN3 Nov like TSP1 domain
    cl21545
    Location:244 → 328
    GHB_like; Glycoprotein hormone beta chain homologues
Nucleotide Protein
Heading Accession and Version

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