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galnt18a UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18a [ Electrophorus electricus (electric eel) ]

Gene ID: 113583342, updated on 18-Jun-2024

Summary

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Gene symbol
galnt18a
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18a
See related
Ensembl:ENSEEEG00000007836
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Orthologs
zebrafish all
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Genomic context

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See galnt18a in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 12 NC_049546.1 (3634456..3677633, complement)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020826278.1 (233720..275295)

Chromosome 12 - NC_049546.1Genomic Context describing neighboring genes Neighboring gene BTB (POZ) domain containing 10a Neighboring gene PIGY upstream open reading frame Neighboring gene vac14 homolog (S. cerevisiae) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon GCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 18a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049546.1 Reference fEleEle1.pri

    Range
    3634456..3677633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035531932.1 → XP_035387825.1  polypeptide N-acetylgalactosaminyltransferase 18a isoform X2

    UniProtKB/TrEMBL
    A0A4W4EX18
    Conserved Domains (2) summary
    cd02510
    Location:158 → 459
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:470 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_035531931.1 → XP_035387824.1  polypeptide N-acetylgalactosaminyltransferase 18a isoform X1

    UniProtKB/TrEMBL
    A0A4W4EX18
    Related
    ENSEEEP00000015857.2, ENSEEET00000016039.2
    Conserved Domains (2) summary
    cd02510
    Location:158 → 459
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:472 → 599
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
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