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kirrel3a kirre like nephrin family adhesion molecule 3a [ Electrophorus electricus (electric eel) ]

Gene ID: 113580741, updated on 18-Jun-2024

Summary

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Gene symbol
kirrel3a
Gene description
kirre like nephrin family adhesion molecule 3a
See related
Ensembl:ENSEEEG00000011134
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Also known as
kirrel3
Orthologs
human zebrafish all
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Genomic context

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See kirrel3a in Genome Data Viewer
Location:
chromosome: 17
Exon count:
15
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 17 NC_049551.1 (14155000..14257130, complement)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020826181.1 (321098..423273)

Chromosome 17 - NC_049551.1Genomic Context describing neighboring genes Neighboring gene CXADR-like membrane protein Neighboring gene small fragment nuclease Neighboring gene potassium inwardly rectifying channel subfamily J member 1b Neighboring gene somatolactin beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3
Names
kirre like nephrin family adhesion molecule 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049551.1 Reference fEleEle1.pri

    Range
    14155000..14257130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027015469.2 → XP_026871270.2  kin of IRRE-like protein 3

    UniProtKB/TrEMBL
    A0A4W4FFS1
    Related
    ENSEEEP00000022948.2, ENSEEET00000023204.2
    Conserved Domains (5) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:224 → 263
    Ig_2; Immunoglobulin domain
    cd00096
    Location:120 → 123
    Ig; Ig strand A [structural motif]
    cd05898
    Location:388 → 485
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:119 → 216
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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