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sfrp1b secreted frizzled-related protein 1b [ Electrophorus electricus (electric eel) ]

Gene ID: 113572295, updated on 18-Jun-2024

Summary

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Gene symbol
sfrp1b
Gene description
secreted frizzled-related protein 1b
See related
Ensembl:ENSEEEG00000008282
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Orthologs
zebrafish all
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Genomic context

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See sfrp1b in Genome Data Viewer
Location:
chromosome: 17
Exon count:
3
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 17 NC_049551.1 (927912..933553)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020825994.1 (6027..11693)

Chromosome 17 - NC_049551.1Genomic Context describing neighboring genes Neighboring gene lysyl oxidase-like 2a Neighboring gene R3H domain and coiled-coil containing 1 Neighboring gene golgin A7 Neighboring gene zinc metalloproteinase-disintegrin-like MTP9 Neighboring gene disintegrin-like halysetin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secreted frizzled-related protein 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049551.1 Reference fEleEle1.pri

    Range
    927912..933553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027001727.2 → XP_026857528.2  secreted frizzled-related protein 1b

    UniProtKB/TrEMBL
    A0A4W4EWM8
    Related
    ENSEEEP00000016708.2, ENSEEET00000016900.2
    Conserved Domains (2) summary
    cd03580
    Location:166 → 288
    NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
    cl02447
    Location:37 → 160
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
Nucleotide Protein
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