U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC113555629 laminin subunit alpha-1 [ Rhopalosiphum maidis (corn leaf aphid) ]

Gene ID: 113555629, updated on 10-May-2024

Summary

Go to the top of the page Help
Gene symbol
LOC113555629
Gene description
laminin subunit alpha-1
See related
EnsemblRapid:LOC113555629
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhopalosiphum maidis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Aphidini; Rhopalosiphum
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC113555629 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
50
Annotation release Status Assembly Chr Location
101 current ASM367621v3 (GCF_003676215.2) 3 NC_040879.1 (7200071..7251443, complement)
100 previous assembly ASM367621v1 (GCF_003676215.1) Unplaced Scaffold NW_020825722.1 (84648066..84699438, complement)

Chromosome 3 - NC_040879.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113556680 Neighboring gene innexin inx2-like Neighboring gene dynein heavy chain 2, axonemal-like Neighboring gene uncharacterized LOC113558212

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Rhopalosiphum maidis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM367621v3

Genomic

  1. NC_040879.1 Reference ASM367621v3

    Range
    7200071..7251443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026960092.1 → XP_026815893.1  laminin subunit alpha-1

    Related
    XP_026815893.1, XM_026960092.1
    Conserved Domains (8) summary
    smart00180
    Location:1003 → 1048
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:906 → 944
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3062 → 3217
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1146 → 1194
    Laminin_EGF; Laminin EGF domain
    pfam00052
    Location:1352 → 1476
    Laminin_B; Laminin B (Domain IV)
    pfam00055
    Location:58 → 284
    Laminin_N; Laminin N-terminal (Domain VI)
    cl22861
    Location:2285 → 2434
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cl25588
    Location:1694 → 2231
    NBD94; Nucleotide-Binding Domain 94 of RH
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases