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mgat5 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113547435, updated on 15-Mar-2024

Summary

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Gene symbol
mgat5
Gene description
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase
Locus tag
PHYPO_G00147940
See related
EnsemblRapid:ENSPHYG00025022935
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See mgat5 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 25 NC_069734.1 (15425773..15525205)

Chromosome 25 - NC_069734.1Genomic Context describing neighboring genes Neighboring gene muscle RAS oncogene homolog b Neighboring gene parathyroid hormone 2 receptor b Neighboring gene transmembrane protein 163b Neighboring gene cyclin T2b Neighboring gene zinc finger, RAN-binding domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069734.1 Chromosome 25 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069734.1 Reference fPanHyp1.pri

    Range
    15425773..15525205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026947769.3 → XP_026803570.1  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

    UniProtKB/TrEMBL
    A0A5N5KCZ3
    Related
    ENSPHYP00025053483.1, ENSPHYT00025058346.1
    Conserved Domains (2) summary
    pfam15024
    Location:174 → 728
    Glyco_transf_18; Glycosyltransferase family 18
    pfam15027
    Location:3 → 140
    DUF4525; Domain of unknown function (DUF4525)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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