U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113546672, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
tmtc3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
Locus tag
PHYPO_G00227230
See related
EnsemblRapid:ENSPHYG00025010996
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See tmtc3 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 7 NC_069716.1 (27552105..27593695)

Chromosome 7 - NC_069716.1Genomic Context describing neighboring genes Neighboring gene BLOC-1 related complex subunit 5 Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1 Neighboring gene centrosomal protein 290 Neighboring gene kit ligand a Neighboring gene solute carrier family 23 member 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_069716.1 Chromosome 7 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein O-mannosyl-transferase TMTC3
Names
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069716.1 Reference fPanHyp1.pri

    Range
    27552105..27593695
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026946647.3 → XP_026802448.1  protein O-mannosyl-transferase TMTC3

    UniProtKB/TrEMBL
    A0A5N5NX38
    Related
    ENSPHYP00025024963.1, ENSPHYT00025027031.1
    Conserved Domains (4) summary
    TIGR02917
    Location:433 → 812
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:258 → 331
    DUF1736; Domain of unknown function (DUF1736)
    cl21508
    Location:816 → 862
    Ribosomal_P1_P2_L12p; Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.