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lman2lb lectin, mannose-binding 2-like b [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113542571, updated on 19-Jun-2024

Summary

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Gene symbol
lman2lb
Gene description
lectin, mannose-binding 2-like b
Locus tag
PHYPO_G00138840
See related
EnsemblRapid:ENSPHYG00025008489
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
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Genomic context

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See lman2lb in Genome Data Viewer
Location:
chromosome: 24
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 24 NC_069733.1 (3147743..3154764)

Chromosome 24 - NC_069733.1Genomic Context describing neighboring genes Neighboring gene HtrA serine peptidase 4 Neighboring gene TM2 domain containing 2 Neighboring gene T-box transcription factor 3b Neighboring gene leukocyte surface antigen CD53 Neighboring gene A-Raf proto-oncogene, serine/threonine kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069733.1 Chromosome 24 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lectin, mannose-binding 2-like b
Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069733.1 Reference fPanHyp1.pri

    Range
    3147743..3154764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026940192.3 → XP_026795993.1  lectin, mannose-binding 2-like b

    UniProtKB/TrEMBL
    A0A5N5KBW2
    Related
    ENSPHYP00025018956.1, ENSPHYT00025020537.1
    Conserved Domains (1) summary
    cl14058
    Location:56 → 304
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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