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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113541637, updated on 15-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
Locus tag
PHYPO_G00057980
See related
EnsemblRapid:ENSPHYG00025023131
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: 15
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 15 NC_069724.1 (1701276..1878736, complement)

Chromosome 15 - NC_069724.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene uncharacterized LOC117599133 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem (nuclear organelle) associated protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069724.1 Chromosome 15 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069724.1 Reference fPanHyp1.pri

    Range
    1701276..1878736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026938741.3 → XP_026794542.1  delta-sarcoglycan isoform X2

    Related
    ENSPHYP00025053800.1, ENSPHYT00025058768.1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_026938742.3 → XP_026794543.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_026938739.3 → XP_026794540.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A5N5M362
    Related
    ENSPHYP00025053797.1, ENSPHYT00025058765.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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