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galnt2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113541211, updated on 15-Mar-2024

Summary

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Gene symbol
galnt2
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
Locus tag
PHYPO_G00176280
See related
EnsemblRapid:ENSPHYG00025004463
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See galnt2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 3 NC_069712.1 (9304276..9398020)

Chromosome 3 - NC_069712.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 235 Neighboring gene zinc finger protein 235 Neighboring gene piggyBac transposable element derived 5 Neighboring gene component of oligomeric golgi complex 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069712.1 Chromosome 3 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069712.1 Reference fPanHyp1.pri

    Range
    9304276..9398020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026938070.3 → XP_026793871.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X3

    Related
    ENSPHYP00025008996.1, ENSPHYT00025010214.1
    Conserved Domains (2) summary
    cd02510
    Location:127 → 422
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:434 → 557
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_026938078.3 → XP_026793879.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X4

    UniProtKB/TrEMBL
    A0A5N5PPH1
    Related
    ENSPHYP00025008999.1, ENSPHYT00025010217.1
    Conserved Domains (2) summary
    cd02510
    Location:127 → 422
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:434 → 551
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_053232773.1 → XP_053088748.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X1

  4. XM_053232774.1 → XP_053088749.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X2

Nucleotide Protein
Heading Accession and Version

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