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dysf dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113540498, updated on 15-Mar-2024

Summary

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Gene symbol
dysf
Gene description
dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)
Locus tag
PHYPO_G00193980
See related
EnsemblRapid:ENSPHYG00025014071
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See dysf in Genome Data Viewer
Location:
chromosome: 4
Exon count:
61
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 4 NC_069713.1 (17784060..17861691, complement)

Chromosome 4 - NC_069713.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 26B1 Neighboring gene uncharacterized LOC117597208 Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25 Neighboring gene mastermind-like domain-containing protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069713.1 Chromosome 4 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069713.1 Reference fPanHyp1.pri

    Range
    17784060..17861691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053233141.1 → XP_053089116.1  dysferlin isoform X3

    Related
    ENSPHYP00025037033.1, ENSPHYT00025039395.1

  2. XM_053233143.1 → XP_053089118.1  dysferlin isoform X7

  3. XM_026937048.3 → XP_026792849.2  dysferlin isoform X9

    Related
    ENSPHYP00025036977.1, ENSPHYT00025039339.1

  4. XM_026937043.3 → XP_026792844.2  dysferlin isoform X8

  5. XM_026937034.3 → XP_026792835.2  dysferlin isoform X6

  6. XM_026937041.3 → XP_026792842.2  dysferlin isoform X5

    Related
    ENSPHYP00025036671.1, ENSPHYT00025039032.1

  7. XM_053233142.1 → XP_053089117.1  dysferlin isoform X4

    Related
    ENSPHYP00025036942.1, ENSPHYT00025039304.1

  8. XM_026937040.3 → XP_026792841.2  dysferlin isoform X2

    Related
    ENSPHYP00025036171.1, ENSPHYT00025038463.1

  9. XM_026937039.3 → XP_026792840.2  dysferlin isoform X1

RNA

  1. XR_008301590.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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