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st6galnac5a ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5a [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113540196, updated on 15-Mar-2024

Summary

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Gene symbol
st6galnac5a
Gene description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5a
Locus tag
PHYPO_G00198840
See related
EnsemblRapid:ENSPHYG00025028577
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See st6galnac5a in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 4 NC_069713.1 (30051117..30087083)

Chromosome 4 - NC_069713.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128318079 Neighboring gene COPI coat complex subunit epsilon Neighboring gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class K Neighboring gene adenylate kinase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069713.1 Chromosome 4 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
Names
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069713.1 Reference fPanHyp1.pri

    Range
    30051117..30087083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026936504.3 → XP_026792305.2  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X1

    UniProtKB/TrEMBL
    A0A5N5PJC7
    Conserved Domains (1) summary
    pfam00777
    Location:66 → 257
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_026936505.3 → XP_026792306.3  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X2

    Related
    ENSPHYP00025060306.1, ENSPHYT00025069336.1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases