U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

hs2st1a heparan sulfate 2-O-sulfotransferase 1a [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113539134, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
hs2st1a
Gene description
heparan sulfate 2-O-sulfotransferase 1a
Locus tag
PHYPO_G00056850
See related
EnsemblRapid:ENSPHYG00025009137
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See hs2st1a in Genome Data Viewer
Location:
chromosome: 14
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 14 NC_069723.1 (24663694..24682025, complement)

Chromosome 14 - NC_069723.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing protein 16 Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like Neighboring gene selenoprotein F Neighboring gene family with sequence similarity 110 member B

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_069723.1 Chromosome 14 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
heparan sulfate 2-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069723.1 Reference fPanHyp1.pri

    Range
    24663694..24682025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034310454.2 → XP_034166345.1  heparan sulfate 2-O-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A5N5M6M7
    Related
    ENSPHYP00025020534.1, ENSPHYT00025022210.1
    Conserved Domains (1) summary
    pfam03567
    Location:74 → 325
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases