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chst10 carbohydrate sulfotransferase 10 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113537239, updated on 15-Mar-2024

Summary

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Gene symbol
chst10
Gene description
carbohydrate sulfotransferase 10
Locus tag
PHYPO_G00152050
See related
EnsemblRapid:ENSPHYG00025007525
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See chst10 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 26 NC_069735.1 (7713202..7732660)

Chromosome 26 - NC_069735.1Genomic Context describing neighboring genes Neighboring gene FERM and PDZ domain-containing protein 4-like Neighboring gene ribose-phosphate pyrophosphokinase 2 Neighboring gene LON peptidase N-terminal domain and ring finger 2 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069735.1 Chromosome 26 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069735.1 Reference fPanHyp1.pri

    Range
    7713202..7732660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026931636.3 → XP_026787437.3  carbohydrate sulfotransferase 10 isoform X4

    Related
    ENSPHYP00025016731.1, ENSPHYT00025018099.1

  2. XM_034300396.2 → XP_034156287.2  carbohydrate sulfotransferase 10 isoform X2

    Related
    ENSPHYP00025016737.1, ENSPHYT00025018105.1

  3. XM_026931634.3 → XP_026787435.3  carbohydrate sulfotransferase 10 isoform X3

    Related
    ENSPHYP00025016714.1, ENSPHYT00025018082.1

  4. XM_026931633.3 → XP_026787434.3  carbohydrate sulfotransferase 10 isoform X1

Nucleotide Protein
Heading Accession and Version

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