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lama2 laminin, alpha 2 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113536689, updated on 6-Jun-2024

Summary

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Gene symbol
lama2
Gene description
laminin, alpha 2
Locus tag
PHYPO_G00185110
See related
EnsemblRapid:ENSPHYG00025002958
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See lama2 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
64
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 30 NC_069739.1 (1708689..1848027)

Chromosome 30 - NC_069739.1Genomic Context describing neighboring genes Neighboring gene thymocyte selection associated Neighboring gene protein tyrosine phosphatase receptor type K Neighboring gene tripartite motif-containing protein 16 Neighboring gene tripartite motif-containing protein 29

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069739.1 Chromosome 30 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: laminin subunit alpha-2
Names
laminin subunit alpha 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069739.1 Reference fPanHyp1.pri

    Range
    1708689..1848027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053231698.1 → XP_053087673.1  LOW QUALITY PROTEIN: laminin subunit alpha-2

    UniProtKB/TrEMBL
    A0A5N5JCS1
    Related
    ENSPHYP00025005698.1, ENSPHYT00025006634.1
Nucleotide Protein
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Gene LinkOut

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