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tmtc2b transmembrane O-mannosyltransferase targeting cadherins 2b [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113534624, updated on 15-Mar-2024

Summary

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Gene symbol
tmtc2b
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2b
Locus tag
PHYPO_G00213000
See related
EnsemblRapid:ENSPHYG00025010930
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
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Genomic context

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See tmtc2b in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 6 NC_069715.1 (9894342..9993520, complement)

Chromosome 6 - NC_069715.1Genomic Context describing neighboring genes Neighboring gene protein FAM180A Neighboring gene solute carrier family 23 member 4 Neighboring gene calcium release activated channel regulator 2Aa Neighboring gene protein arginine N-methyltransferase 8-B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069715.1 Chromosome 6 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069715.1 Reference fPanHyp1.pri

    Range
    9894342..9993520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026927546.3 → XP_026783347.1  protein O-mannosyl-transferase TMTC2

    UniProtKB/TrEMBL
    A0A5N5P7G3
    Related
    ENSPHYP00025024749.1, ENSPHYT00025026817.1
    Conserved Domains (3) summary
    TIGR02917
    Location:490 → 825
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:496 → 524
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:249 → 323
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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