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kirrel3b kirre like nephrin family adhesion molecule 3b [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113534533, updated on 15-Mar-2024

Summary

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Gene symbol
kirrel3b
Gene description
kirre like nephrin family adhesion molecule 3b
Locus tag
PHYPO_G00212180
See related
EnsemblRapid:ENSPHYG00025019771
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
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Genomic context

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See kirrel3b in Genome Data Viewer
Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 6 NC_069715.1 (6563698..6764528, complement)

Chromosome 6 - NC_069715.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 7 Neighboring gene BARX homeobox 2 Neighboring gene uncharacterized LOC128318542 Neighboring gene transfer RNA proline (anticodon AGG)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069715.1 Chromosome 6 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069715.1 Reference fPanHyp1.pri

    Range
    6563698..6764528 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053235210.1 → XP_053091185.1  kin of IRRE-like protein 3 isoform X7

  2. XM_053235207.1 → XP_053091182.1  kin of IRRE-like protein 3 isoform X4

  3. XM_026927410.3 → XP_026783211.3  kin of IRRE-like protein 3 isoform X2

  4. XM_053235209.1 → XP_053091184.1  kin of IRRE-like protein 3 isoform X6

  5. XM_053235206.1 → XP_053091181.1  kin of IRRE-like protein 3 isoform X3

  6. XM_053235208.1 → XP_053091183.1  kin of IRRE-like protein 3 isoform X5

    Related
    ENSPHYP00025047686.1, ENSPHYT00025051050.1

  7. XM_053235204.1 → XP_053091179.1  kin of IRRE-like protein 3 isoform X1

    Related
    ENSPHYP00025047682.1, ENSPHYT00025051046.1
Nucleotide Protein
Heading Accession and Version

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