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mgat4c mgat4 family member C [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113534472, updated on 15-Mar-2024

Summary

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Gene symbol
mgat4c
Gene description
mgat4 family member C
Locus tag
PHYPO_G00213690
See related
EnsemblRapid:ENSPHYG00025012305
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See mgat4c in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 6 NC_069715.1 (12149966..12275376, complement)

Chromosome 6 - NC_069715.1Genomic Context describing neighboring genes Neighboring gene Ras association domain family member 9 Neighboring gene neurotensin Neighboring gene epidermal growth factor receptor pathway substrate 8b Neighboring gene small nucleolar RNA SNORD97 Neighboring gene uncharacterized LOC113534448 Neighboring gene eukaryotic translation initiation factor 4, gamma 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069715.1 Chromosome 6 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069715.1 Reference fPanHyp1.pri

    Range
    12149966..12275376 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026927314.3 → XP_026783115.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    UniProtKB/TrEMBL
    A0A5N5P5E6
    Conserved Domains (1) summary
    pfam04666
    Location:58 → 324
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

  2. XM_026927311.3 → XP_026783112.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    UniProtKB/TrEMBL
    A0A5N5P5E6
    Conserved Domains (1) summary
    pfam04666
    Location:58 → 324
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

  3. XM_034304975.2 → XP_034160866.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    UniProtKB/TrEMBL
    A0A5N5P5E6
    Related
    ENSPHYP00025028448.1, ENSPHYT00025030602.1
    Conserved Domains (1) summary
    pfam04666
    Location:58 → 324
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

  4. XM_034304976.2 → XP_034160867.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    UniProtKB/TrEMBL
    A0A5N5P5E6
    Conserved Domains (1) summary
    pfam04666
    Location:58 → 324
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

  5. XM_026927313.3 → XP_026783114.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    UniProtKB/TrEMBL
    A0A5N5P5E6
    Conserved Domains (1) summary
    pfam04666
    Location:58 → 324
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

  6. XM_026927312.3 → XP_026783113.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    UniProtKB/TrEMBL
    A0A5N5P5E6
    Conserved Domains (1) summary
    pfam04666
    Location:58 → 324
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
Nucleotide Protein
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