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csgalnact1b chondroitin sulfate N-acetylgalactosaminyltransferase 1b [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113533267, updated on 15-Mar-2024

Summary

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Gene symbol
csgalnact1b
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1b
See related
EnsemblRapid:ENSPHYG00025027770
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
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Genomic context

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See csgalnact1b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 8 NC_069717.1 (15154444..15166893)

Chromosome 8 - NC_069717.1Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 14Bb Neighboring gene spindlin b Neighboring gene phospholipid phosphatase 1 Neighboring gene uncharacterized LOC113533162

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069717.1 Chromosome 8 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069717.1 Reference fPanHyp1.pri

    Range
    15154444..15166893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034306822.2 → XP_034162713.2  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    Related
    ENSPHYP00025059117.1, ENSPHYT00025067483.1
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases