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galnt1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113532689, updated on 10-Oct-2024

Summary

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Gene symbol
galnt1
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
Locus tag
PHYPO_G00126790
See related
EnsemblRapid:ENSPHYG00025005531
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See galnt1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 22 NC_069731.1 (7679247..7792330, complement)

Chromosome 22 - NC_069731.1Genomic Context describing neighboring genes Neighboring gene DOMON domain-containing protein FRRS1L Neighboring gene transmembrane protein 245 Neighboring gene INO80 complex subunit C Neighboring gene transmembrane protein 145

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069731.1 Chromosome 22 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069731.1 Reference fPanHyp1.pri

    Range
    7679247..7792330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026924208.3 → XP_026780009.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A5N5KRL2
    Related
    ENSPHYP00025011669.1, ENSPHYT00025012968.1
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_026924206.3 → XP_026780007.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A5N5KRL2
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_034298034.2 → XP_034153925.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A5N5KRL2
    Related
    ENSPHYP00025011752.1, ENSPHYT00025013051.1
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_053227991.1 → XP_053083966.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

    Related
    ENSPHYP00025011722.1, ENSPHYT00025013021.1

  5. XM_026924209.3 → XP_026780010.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A5N5KRL2
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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