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chst11 carbohydrate (chondroitin 4) sulfotransferase 11 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113531989, updated on 15-Mar-2024

Summary

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Gene symbol
chst11
Gene description
carbohydrate (chondroitin 4) sulfotransferase 11
Locus tag
PHYPO_G00086150
See related
EnsemblRapid:ENSPHYG00025011698
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See chst11 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 18 NC_069727.1 (5859419..5911252, complement)

Chromosome 18 - NC_069727.1Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 1 family, member L2 Neighboring gene NOP protein chaperone 1 Neighboring gene solute carrier family 41 member 2b Neighboring gene uncharacterized LOC113531950 Neighboring gene nuclear transcription factor Y, beta a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069727.1 Chromosome 18 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069727.1 Reference fPanHyp1.pri

    Range
    5859419..5911252 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026923000.3 → XP_026778801.2  carbohydrate sulfotransferase 11 isoform X2

    Conserved Domains (1) summary
    pfam03567
    Location:108 → 338
    Sulfotransfer_2; Sulfotransferase family

  2. XM_026922999.3 → XP_026778800.2  carbohydrate sulfotransferase 11 isoform X1

    UniProtKB/TrEMBL
    A0A5N5LIN6
    Related
    ENSPHYP00025026920.1, ENSPHYT00025028989.1
    Conserved Domains (1) summary
    pfam03567
    Location:113 → 343
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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