U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC113531111 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113531111, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC113531111
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
Locus tag
PHYPO_G00163140
See related
EnsemblRapid:ENSPHYG00025017878
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC113531111 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 27 NC_069736.1 (17818820..17827210, complement)

Chromosome 27 - NC_069736.1Genomic Context describing neighboring genes Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 Neighboring gene high mobility group nucleosomal binding domain 7 Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 Neighboring gene histo-blood group ABO system transferase 2-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_069736.1 Chromosome 27 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069736.1 Reference fPanHyp1.pri

    Range
    17818820..17827210 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034300518.2 → XP_034156409.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X1

    Conserved Domains (1) summary
    cd02515
    Location:68 → 348
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens

  2. XM_026921612.3 → XP_026777413.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A5N5JTS0, A0A5N5JUF8
    Related
    ENSPHYP00025042883.1, ENSPHYT00025045854.1
    Conserved Domains (1) summary
    cd02515
    Location:68 → 338
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases