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pofut1 protein O-fucosyltransferase 1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113530366, updated on 15-Mar-2024

Summary

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Gene symbol
pofut1
Gene description
protein O-fucosyltransferase 1
Locus tag
PHYPO_G00071610
See related
EnsemblRapid:ENSPHYG00025013769
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See pofut1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 16 NC_069725.1 (13016266..13021361)

Chromosome 16 - NC_069725.1Genomic Context describing neighboring genes Neighboring gene pleiomorphic adenoma gene-like 2 Neighboring gene uncharacterized LOC128320591 Neighboring gene kinesin family member 3B Neighboring gene protein-L-isoaspartate O-methyltransferase domain-containing protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069725.1 Chromosome 16 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide-O-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDP-fucose protein O-fucosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069725.1 Reference fPanHyp1.pri

    Range
    13016266..13021361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034311565.2 → XP_034167456.1  GDP-fucose protein O-fucosyltransferase 1 isoform X2

    Conserved Domains (1) summary
    cd11302
    Location:1 → 320
    O-FucT-1; GDP-fucose protein O-fucosyltransferase 1

  2. XM_026920269.3 → XP_026776070.1  GDP-fucose protein O-fucosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A5N5LW09
    Related
    ENSPHYP00025032587.1, ENSPHYT00025034822.1
    Conserved Domains (1) summary
    cd11302
    Location:35 → 384
    O-FucT-1; GDP-fucose protein O-fucosyltransferase 1
Nucleotide Protein
Heading Accession and Version

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