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si:ch211-269c21.2 carbohydrate sulfotransferase 8 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113528909, updated on 15-Mar-2024

Summary

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Gene symbol
si:ch211-269c21.2
Gene description
carbohydrate sulfotransferase 8
Locus tag
PHYPO_G00225570
See related
EnsemblRapid:ENSPHYG00025021874
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
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Genomic context

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See si:ch211-269c21.2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 7 NC_069716.1 (23349528..23412050)

Chromosome 7 - NC_069716.1Genomic Context describing neighboring genes Neighboring gene complexin 3a Neighboring gene N6-Methyl-AMP deaminase Neighboring gene potassium channel tetramerization domain containing 15a Neighboring gene transcription initiation factor TFIID subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069716.1 Chromosome 7 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069716.1 Reference fPanHyp1.pri

    Range
    23349528..23412050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034305850.2 → XP_034161741.2  carbohydrate sulfotransferase 8

    Related
    ENSPHYP00025051698.1, ENSPHYT00025055881.1

  2. XM_026917746.3 → XP_026773547.3  carbohydrate sulfotransferase 8

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases