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c1galt1c1 C1GALT1-specific chaperone 1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113528710, updated on 15-Mar-2024

Summary

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Gene symbol
c1galt1c1
Gene description
C1GALT1-specific chaperone 1
Locus tag
PHYPO_G00222500
See related
EnsemblRapid:ENSPHYG00025004524
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See c1galt1c1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 7 NC_069716.1 (15653036..15656317)

Chromosome 7 - NC_069716.1Genomic Context describing neighboring genes Neighboring gene SAM and SH3 domain containing 3 Neighboring gene zinc finger DHHC-type palmitoyltransferase 9 Neighboring gene MCTS1 re-initiation and release factor Neighboring gene cullin 4B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069716.1 Chromosome 7 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C1GALT1-specific chaperone 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069716.1 Reference fPanHyp1.pri

    Range
    15653036..15656317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026917368.3 → XP_026773169.3  C1GALT1-specific chaperone 1

    Related
    ENSPHYP00025009039.1, ENSPHYT00025010257.1
Nucleotide Protein
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