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sgca sarcoglycan, alpha [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113527705, updated on 15-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
EnsemblRapid:ENSPHYG00025017789
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 12 NC_069721.1 (5315938..5327553, complement)

Chromosome 12 - NC_069721.1Genomic Context describing neighboring genes Neighboring gene inactive all-trans-retinol 13,14-reductase Neighboring gene collagen, type I, alpha 1b Neighboring gene RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase Neighboring gene dicarbonyl/L-xylulose reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069721.1 Chromosome 12 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069721.1 Reference fPanHyp1.pri

    Range
    5315938..5327553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026915784.3 → XP_026771585.3  alpha-sarcoglycan

    Related
    ENSPHYP00025042642.1, ENSPHYT00025045611.1
Nucleotide Protein
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Gene LinkOut

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