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plecb plectin b [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113526819, updated on 15-Mar-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
Locus tag
PHYPO_G00001090
See related
EnsemblRapid:ENSPHYG00025005556
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: 1
Exon count:
39
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 1 NC_069710.1 (3152251..3266795)

Chromosome 1 - NC_069710.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3, subunit E, a Neighboring gene R-spondin 2 Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52 member 3-2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069710.1 Chromosome 1 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069710.1 Reference fPanHyp1.pri

    Range
    3152251..3266795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053227748.1 → XP_053083723.1  plectin isoform X2

  2. XM_053227729.1 → XP_053083704.1  plectin isoform X1

    Related
    ENSPHYP00025011712.1, ENSPHYT00025013011.1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases