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large2 LARGE xylosyl- and glucuronyltransferase 2 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113526735, updated on 15-Mar-2024

Summary

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Gene symbol
large2
Gene description
LARGE xylosyl- and glucuronyltransferase 2
Locus tag
PHYPO_G00216840
See related
EnsemblRapid:ENSPHYG00025006223
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
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Genomic context

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See large2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 6 NC_069715.1 (24252751..24390199, complement)

Chromosome 6 - NC_069715.1Genomic Context describing neighboring genes Neighboring gene kinesin family member C3 Neighboring gene cyclic nucleotide gated channel subunit beta 1a Neighboring gene para-nitrobenzyl esterase Neighboring gene peroxisomal biogenesis factor 16 Neighboring gene ADP-ribosylation factor GTPase activating protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069715.1 Chromosome 6 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyl- and glucuronyltransferase LARGE2s

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069715.1 Reference fPanHyp1.pri

    Range
    24252751..24390199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053234709.1 → XP_053090684.1  xylosyl- and glucuronyltransferase LARGE2s

    UniProtKB/TrEMBL
    A0A5N5P658

  2. XM_026914045.3 → XP_026769846.1  xylosyl- and glucuronyltransferase LARGE2s

    UniProtKB/TrEMBL
    A0A5N5P658
    Conserved Domains (2) summary
    cd06431
    Location:129 → 408
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:464 → 696
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  3. XM_053234707.1 → XP_053090682.1  xylosyl- and glucuronyltransferase LARGE2s

    UniProtKB/TrEMBL
    A0A5N5P658

  4. XM_026914043.3 → XP_026769844.1  xylosyl- and glucuronyltransferase LARGE2s

    UniProtKB/TrEMBL
    A0A5N5P658
    Related
    ENSPHYP00025013487.1, ENSPHYT00025014789.1
    Conserved Domains (2) summary
    cd06431
    Location:129 → 408
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:464 → 696
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  5. XM_026914046.3 → XP_026769847.1  xylosyl- and glucuronyltransferase LARGE2s

    UniProtKB/TrEMBL
    A0A5N5P658
    Conserved Domains (2) summary
    cd06431
    Location:129 → 408
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:464 → 696
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  6. XM_053234708.1 → XP_053090683.1  xylosyl- and glucuronyltransferase LARGE2s

    UniProtKB/TrEMBL
    A0A5N5P658
    Related
    ENSPHYP00025013483.1, ENSPHYT00025014785.1
Nucleotide Protein
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