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LOC113525231 heparan sulfate glucosamine 3-O-sulfotransferase 5 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113525231, updated on 23-Nov-2023

Summary

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Gene symbol
LOC113525231
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 5
See related
EnsemblRapid:ENSPHYG00025004888
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Also known as
hs3st5
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Genomic context

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See LOC113525231 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 30 NC_069739.1 (117366..119220)

Chromosome 30 - NC_069739.1Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase domain containing 1 Neighboring gene collagen, type X, alpha 1b Neighboring gene fyn-related Src family tyrosine kinase Neighboring gene histone deacetylase 2 Neighboring gene myristoylated alanine-rich protein kinase C substrate a Neighboring gene laminin, alpha 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069739.1 Chromosome 30 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 5
Names
heparan sulfate-glucosamine 3-sulfotransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069739.1 Reference fPanHyp1.pri

    Range
    117366..119220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053231796.1 → XP_053087771.1  heparan sulfate glucosamine 3-O-sulfotransferase 5

    Related
    ENSPHYP00025009823.1, ENSPHYT00025011119.1
Nucleotide Protein
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Gene LinkOut

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