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LOC113523855 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113523855, updated on 23-Nov-2023

Summary

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Gene symbol
LOC113523855
Gene description
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1
Locus tag
PHYPO_G00240050
See related
EnsemblRapid:ENSPHYG00025002617
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
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Genomic context

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See LOC113523855 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 9 NC_069718.1 (4168419..4214256, complement)

Chromosome 9 - NC_069718.1Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen-6, epidermis Neighboring gene sperm acrosome associated 4 like Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069718.1 Chromosome 9 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside (CMP) alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069718.1 Reference fPanHyp1.pri

    Range
    4168419..4214256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026909915.3 → XP_026765716.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1

    UniProtKB/TrEMBL
    A0A5N5NDN0
    Related
    ENSPHYP00025004637.1, ENSPHYT00025005540.1
    Conserved Domains (1) summary
    pfam00777
    Location:69 → 324
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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