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LINC02617 long intergenic non-protein coding RNA 2617 [ Homo sapiens (human) ]

Gene ID: 113523642, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02617provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2617provided by HGNC
Primary source
HGNC:HGNC:54089
See related
Ensembl:ENSG00000256288 AllianceGenome:HGNC:54089
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
12p13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (10332860..10338292, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (10219675..10225108, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (10485459..10490891, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene killer cell lectin like receptor D1 Neighboring gene uncharacterized LOC124902875 Neighboring gene uncharacterized LOC105369656 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:10490627-10491205 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:10491206-10491785 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:10513466-10514066 Neighboring gene long intergenic non-protein coding RNA 2598 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5960 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5961 Neighboring gene KLRK1 antisense RNA 1 Neighboring gene MPRA-validated peak1570 silencer Neighboring gene KLRC4-KLRK1 readthrough Neighboring gene killer cell lectin like receptor K1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells. Xiong W, et al. Asian Pac J Cancer Prev, 2015. PMID 25921151
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_159946.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022075, AI936748, DA666561
    Related
    ENST00000539009.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    10332860..10338292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    10219675..10225108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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