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LOC113505074 irregular chiasm C-roughest protein-like [ Trichoplusia ni (cabbage looper) ]

Gene ID: 113505074, updated on 21-Dec-2023

Summary

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Gene symbol
LOC113505074
Gene description
irregular chiasm C-roughest protein-like
See related
EnsemblRapid:ENSNTCG00000018861
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichoplusia ni
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia
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Genomic context

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See LOC113505074 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
24
Annotation release Status Assembly Chr Location
100 current tn1 (GCF_003590095.1) 24 NC_039501.1 (3762852..3876075, complement)

Chromosome 24 - NC_039501.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113505153 Neighboring gene uncharacterized LOC113505060 Neighboring gene putative nuclease HARBI1 Neighboring gene uncharacterized protein KIAA0754-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039501.1 Chromosome 24 Reference tn1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome responses of the host Trichoplusia ni to infection by the baculovirus Autographa californica multiple nucleopolyhedrovirus. Chen YR, et al. J Virol, 2014 Dec. PMID 25231311, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trichoplusia ni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference tn1

Genomic

  1. NC_039501.1 Reference tn1

    Range
    3762852..3876075 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026887582.1 → XP_026743383.1  irregular chiasm C-roughest protein-like

    UniProtKB/TrEMBL
    A0A7E5WRY7

  2. XM_026887583.1 → XP_026743384.1  irregular chiasm C-roughest protein-like

    UniProtKB/TrEMBL
    A0A7E5WRY7
    Related
    ENSNTCP00000024466.1, ENSNTCT00000030180.1
    Conserved Domains (5) summary
    pfam08205
    Location:184 → 271
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13927
    Location:297 → 354
    Ig_3; Immunoglobulin domain
    cl11960
    Location:455 → 552
    Ig; Immunoglobulin domain
    cl25495
    Location:809 → 926
    Endomucin
    cl28434
    Location:371 → 453
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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