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CHPF2 chondroitin polymerizing factor 2 [ Athene cunicularia (burrowing owl) ]

Gene ID: 113477576, updated on 3-Aug-2024

Summary

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Gene symbol
CHPF2
Gene description
chondroitin polymerizing factor 2
See related
Ensembl:ENSACUG00000003267
Gene type
protein coding
RefSeq status
MODEL
Organism
Athene cunicularia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Strigidae; Athene
Orthologs
human mouse all
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Genomic context

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See CHPF2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
100 current athCun1 (GCF_003259725.1) 2 Unlocalized Scaffold NW_020799096.1 (2868373..2872950, complement)

NW_020799096.1Genomic Context describing neighboring genes Neighboring gene protein disulfide isomerase family A member 4 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D3 Neighboring gene histone H2B, gonadal-like Neighboring gene ATP binding cassette subfamily F member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020799096 Chromosome 2 Unlocalized Scaffold Reference athCun1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Athene cunicularia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference athCun1

Genomic

  1. NW_020799096.1 Reference athCun1

    Range
    2868373..2872950 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026843982.1 → XP_026699783.1  chondroitin sulfate glucuronyltransferase

    UniProtKB/TrEMBL
    A0A663LZG7
    Related
    ENSACUP00000004808.1, ENSACUT00000005128.1
    Conserved Domains (2) summary
    pfam05679
    Location:97 → 599
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:28 → 124
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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