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SEH1L SEH1 like nucleoporin [ Athene cunicularia (burrowing owl) ]

Gene ID: 113476099, updated on 3-Aug-2024

Summary

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Gene symbol
SEH1L
Gene description
SEH1 like nucleoporin
See related
Ensembl:ENSACUG00000002204
Gene type
protein coding
RefSeq status
MODEL
Organism
Athene cunicularia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Strigidae; Athene
Orthologs
human mouse all
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Genomic context

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See SEH1L in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
100 current athCun1 (GCF_003259725.1) 2 Unlocalized Scaffold NW_020799095.1 (97041490..97053275, complement)

NW_020799095.1Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor class A domain containing 4 Neighboring gene centrosomal protein 192 Neighboring gene protein tyrosine phosphatase non-receptor type 2 Neighboring gene centrosomal protein 76 Neighboring gene proteasome assembly chaperone 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020799095 Chromosome 2 Unlocalized Scaffold Reference athCun1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Seh1-associated complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore outer ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleoporin SEH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Athene cunicularia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference athCun1

Genomic

  1. NW_020799095.1 Reference athCun1

    Range
    97041490..97053275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026841424.1 → XP_026697225.1  nucleoporin SEH1

    UniProtKB/TrEMBL
    A0A663LUK6
    Related
    ENSACUP00000003218.1, ENSACUT00000003423.1
    Conserved Domains (2) summary
    sd00039
    Location:27 → 77
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:3 → 272
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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