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HCFC2 host cell factor C2 [ Pseudonaja textilis ]

Gene ID: 113455365, updated on 15-Mar-2024

Summary

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Gene symbol
HCFC2
Gene description
host cell factor C2
See related
Ensembl:ENSPTXG00000008535
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudonaja textilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
Orthologs
human mouse all
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Genomic context

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See HCFC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769308.1 (15922196..15951705)

NW_020769308.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C12orf73 homolog Neighboring gene thymine DNA glycosylase Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene nuclear transcription factor Y subunit beta Neighboring gene thioredoxin reductase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020769308 Unplaced Scaffold Reference EBS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EBS10Xv2-PRI

Genomic

  1. NW_020769308.1 Reference EBS10Xv2-PRI

    Range
    15922196..15951705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026726683.1 → XP_026582468.1  host cell factor 2 isoform X1

    UniProtKB/TrEMBL
    A0A670YJS3
    Conserved Domains (4) summary
    cd00063
    Location:614 → 645
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:191 → 242
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:312 → 354
    Kelch_5; Kelch motif
    cl26061
    Location:9 → 299
    PLN02193; nitrile-specifier protein

  2. XM_026726692.1 → XP_026582477.1  host cell factor 2 isoform X2

    UniProtKB/TrEMBL
    A0A670YM06
    Related
    ENSPTXP00000012119.1, ENSPTXT00000012515.1
    Conserved Domains (4) summary
    cd00063
    Location:556 → 587
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:191 → 242
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:312 → 354
    Kelch_5; Kelch motif
    cl26061
    Location:9 → 299
    PLN02193; nitrile-specifier protein
Nucleotide Protein
Heading Accession and Version

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