U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TDG thymine DNA glycosylase [ Pseudonaja textilis ]

Gene ID: 113455338, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
TDG
Gene description
thymine DNA glycosylase
See related
Ensembl:ENSPTXG00000008533
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudonaja textilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TDG in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769308.1 (15890365..15905359)

NW_020769308.1Genomic Context describing neighboring genes Neighboring gene heat shock protein 90 beta family member 1 Neighboring gene chromosome unknown C12orf73 homolog Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene host cell factor C2 Neighboring gene nuclear transcription factor Y subunit beta

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_020769308 Unplaced Scaffold Reference EBS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mismatch base pair DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair, AP site formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
G/T mismatch-specific thymine DNA glycosylase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EBS10Xv2-PRI

Genomic

  1. NW_020769308.1 Reference EBS10Xv2-PRI

    Range
    15890365..15905359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026726660.1 → XP_026582445.1  G/T mismatch-specific thymine DNA glycosylase isoform X3

    UniProtKB/TrEMBL
    A0A670YJQ0
    Related
    ENSPTXP00000012115.1, ENSPTXT00000012511.1
    Conserved Domains (1) summary
    TIGR00584
    Location:1 → 301
    mug; mismatch-specific thymine-DNA glycosylate (mug)

  2. XM_026726651.1 → XP_026582436.1  G/T mismatch-specific thymine DNA glycosylase isoform X2

    UniProtKB/TrEMBL
    A0A670YJQ0
    Conserved Domains (1) summary
    TIGR00584
    Location:2 → 327
    mug; mismatch-specific thymine-DNA glycosylate (mug)

  3. XM_026726643.1 → XP_026582428.1  G/T mismatch-specific thymine DNA glycosylase isoform X1

    UniProtKB/TrEMBL
    A0A670YJQ0
    Conserved Domains (1) summary
    TIGR00584
    Location:22 → 332
    mug; mismatch-specific thymine-DNA glycosylate (mug)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.