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LOC113451860 dysferlin-like [ Pseudonaja textilis ]

Gene ID: 113451860, updated on 23-Oct-2023

Summary

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Gene symbol
LOC113451860
Gene description
dysferlin-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudonaja textilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC113451860 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769643.1 (466..70440)

NW_020769643.1Genomic Context describing neighboring genes Neighboring gene dysferlin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020769643 Unplaced Scaffold Reference EBS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EBS10Xv2-PRI

Genomic

  1. NW_020769643.1 Reference EBS10Xv2-PRI

    Range
    466..70440
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026723257.1 → XP_026579042.1  dysferlin-like

    Conserved Domains (8) summary
    cd04011
    Location:132 → 241
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:993 → 1121
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:295 → 469
    C2C_Ferlin; C2 domain third repeat in Ferlin
    smart00693
    Location:787 → 843
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:628 → 700
    FerB; FerB (NUC096) domain
    pfam08151
    Location:239 → 289
    FerI; FerI (NUC094) domain
    pfam08165
    Location:563 → 596
    FerA; FerA (NUC095) domain
    cl14603
    Location:1 → 45
    C2; C2 domain
Nucleotide Protein
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