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LOC113448000 ubiquitin carboxyl-terminal hydrolase 1-like [ Pseudonaja textilis ]

Gene ID: 113448000, updated on 23-Oct-2023

Summary

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Gene symbol
LOC113448000
Gene description
ubiquitin carboxyl-terminal hydrolase 1-like
See related
Ensembl:ENSPTXG00000018928
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudonaja textilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
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Genomic context

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See LOC113448000 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769417.1 (1065270..1074954)

NW_020769417.1Genomic Context describing neighboring genes Neighboring gene inaD-like protein Neighboring gene KN motif and ankyrin repeat domain-containing protein 4-like Neighboring gene dedicator of cytokinesis protein 7 Neighboring gene angiopoietin-related protein 3-like Neighboring gene cysteine protease ATG4C-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020769417 Unplaced Scaffold Reference EBS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EBS10Xv2-PRI

Genomic

  1. NW_020769417.1 Reference EBS10Xv2-PRI

    Range
    1065270..1074954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026718523.1 → XP_026574308.1  ubiquitin carboxyl-terminal hydrolase 1-like

    UniProtKB/TrEMBL
    A0A670ZXK6
    Related
    ENSPTXP00000027479.1, ENSPTXT00000028317.1
    Conserved Domains (1) summary
    cd02671
    Location:60 → 596
    Peptidase_C19O; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
Nucleotide Protein
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Molecular Biology Databases