U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SMPD4 sphingomyelin phosphodiesterase 4 [ Pseudonaja textilis ]

Gene ID: 113447051, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SMPD4
Gene description
sphingomyelin phosphodiesterase 4
See related
Ensembl:ENSPTXG00000018759
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudonaja textilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SMPD4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769398.1 (593739..618229, complement)

NW_020769398.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 15 Neighboring gene coiled-coil domain-containing protein 74B-like Neighboring gene gamma-glutamyltransferase 5 Neighboring gene gamma-glutamyltransferase 1 Neighboring gene leucine rich repeat containing 75B

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_020769398 Unplaced Scaffold Reference EBS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sphingomyelin phosphodiesterase 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EBS10Xv2-PRI

Genomic

  1. NW_020769398.1 Reference EBS10Xv2-PRI

    Range
    593739..618229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026717042.1 → XP_026572827.1  sphingomyelin phosphodiesterase 4 isoform X3

    UniProtKB/TrEMBL
    A0A670ZWU7
    Related
    ENSPTXP00000027193.1, ENSPTXT00000028027.1
    Conserved Domains (1) summary
    pfam14724
    Location:22 → 755
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  2. XM_026717041.1 → XP_026572826.1  sphingomyelin phosphodiesterase 4 isoform X2

    Conserved Domains (1) summary
    pfam14724
    Location:22 → 781
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  3. XM_026717040.1 → XP_026572825.1  sphingomyelin phosphodiesterase 4 isoform X1

    UniProtKB/TrEMBL
    A0A670ZWH3
    Related
    ENSPTXP00000027192.1, ENSPTXT00000028026.1
    Conserved Domains (1) summary
    pfam14724
    Location:22 → 782
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  4. XM_026717043.1 → XP_026572828.1  sphingomyelin phosphodiesterase 4 isoform X4

    Conserved Domains (2) summary
    pfam14724
    Location:284 → 636
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
    cl26464
    Location:58 → 230
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.