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AGRN agrin [ Pseudonaja textilis ]

Gene ID: 113446223, updated on 15-Mar-2024

Summary

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Gene symbol
AGRN
Gene description
agrin
See related
Ensembl:ENSPTXG00000007829
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudonaja textilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
Orthologs
human mouse all
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Genomic context

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See AGRN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769387.1 (2457178..2631376)

NW_020769387.1Genomic Context describing neighboring genes Neighboring gene PPARGC1 and ESRR induced regulator, muscle 1 Neighboring gene hes family bHLH transcription factor 4 Neighboring gene tyrosine-protein phosphatase non-receptor type 11-like Neighboring gene ring finger protein 223

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020769387 Unplaced Scaffold Reference EBS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled acetylcholine receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor clustering IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EBS10Xv2-PRI

Genomic

  1. NW_020769387.1 Reference EBS10Xv2-PRI

    Range
    2457178..2631376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026715766.1 → XP_026571551.1  agrin

    UniProtKB/TrEMBL
    A0A670YU90
    Related
    ENSPTXP00000015365.1, ENSPTXT00000015840.1
    Conserved Domains (8) summary
    smart00280
    Location:508 → 553
    KAZAL; Kazal type serine protease inhibitors
    smart00200
    Location:1159 → 1279
    SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    cd00054
    Location:1733 → 1763
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00053
    Location:812 → 854
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:1311 → 1442
    Laminin_G_1; Laminin G domain
    pfam00008
    Location:1464 → 1495
    EGF; EGF-like domain
    pfam03146
    Location:51 → 166
    NtA; Agrin NtA domain
    cl26464
    Location:993 → 1097
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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