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CHPF chondroitin polymerizing factor [ Pseudonaja textilis ]

Gene ID: 113441105, updated on 15-Mar-2024

Summary

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Gene symbol
CHPF
Gene description
chondroitin polymerizing factor
See related
Ensembl:ENSPTXG00000007610
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudonaja textilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
Orthologs
human mouse all
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Genomic context

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See CHPF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769345.1 (10894806..10919798, complement)

NW_020769345.1Genomic Context describing neighboring genes Neighboring gene GDP-mannose pyrophosphorylase A Neighboring gene acid sensing ion channel subunit family member 4 Neighboring gene uncharacterized LOC113441149 Neighboring gene transmembrane protein 198

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020769345 Unplaced Scaffold Reference EBS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EBS10Xv2-PRI

Genomic

  1. NW_020769345.1 Reference EBS10Xv2-PRI

    Range
    10894806..10919798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026707915.1 → XP_026563700.1  chondroitin sulfate synthase 2

    UniProtKB/TrEMBL
    A0A670YG82
    Related
    ENSPTXP00000010762.1, ENSPTXT00000011117.1
    Conserved Domains (2) summary
    pfam05679
    Location:256 → 759
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:183 → 277
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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