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HPSE heparanase [ Pseudonaja textilis ]

Gene ID: 113434882, updated on 15-Mar-2024

Summary

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Gene symbol
HPSE
Gene description
heparanase
See related
Ensembl:ENSPTXG00000014585
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudonaja textilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
Orthologs
human mouse all
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Genomic context

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See HPSE in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769317.1 (29661726..29698524)

NW_020769317.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S18C Neighboring gene helicase, POLQ like Neighboring gene coenzyme Q2, polyprenyltransferase Neighboring gene placenta-specific gene 8 protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020769317 Unplaced Scaffold Reference EBS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparanase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EBS10Xv2-PRI

Genomic

  1. NW_020769317.1 Reference EBS10Xv2-PRI

    Range
    29661726..29698524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026698376.1 → XP_026554161.1  heparanase

    UniProtKB/TrEMBL
    A0A670ZG06
    Related
    ENSPTXP00000021091.1, ENSPTXT00000021731.1
    Conserved Domains (1) summary
    pfam03662
    Location:176 → 377
    Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain
Nucleotide Protein
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Gene LinkOut

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