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PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [ Notechis scutatus (mainland tiger snake) ]

Gene ID: 113422790, updated on 15-Mar-2024

Summary

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Gene symbol
PLOD3
Gene description
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
See related
Ensembl:ENSNSUG00000018345
Gene type
protein coding
RefSeq status
MODEL
Organism
Notechis scutatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Notechis
Orthologs
human mouse all
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Genomic context

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See PLOD3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current TS10Xv2-PRI (GCF_900518725.1) Unplaced Scaffold NW_020716821.1 (232714..288168)

NW_020716821.1Genomic Context describing neighboring genes Neighboring gene alpha-2,8-sialyltransferase 8F-like Neighboring gene zinc finger HIT-type containing 1 Neighboring gene Rho guanine nucleotide exchange factor 15 Neighboring gene uncharacterized protein K02A2.6-like Neighboring gene vigilin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020716821 Unplaced Scaffold Reference TS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notechis scutatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TS10Xv2-PRI

Genomic

  1. NW_020716821.1 Reference TS10Xv2-PRI

    Range
    232714..288168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026683942.1 → XP_026539727.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

    UniProtKB/TrEMBL
    A0A6J1V8X4
    Related
    ENSNSUP00000025662.1, ENSNSUT00000027270.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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